• Vorlesung Algorithmen auf Sequenzen

• Praktikum der Exportveranstaltung Einführung in die Programmierung
• Betreuung PG 583 "Algorithmen zur Entdeckung krebsauslösender Genvarianten"

• Betreuung PG 583 "Algorithmen zur Entdeckung krebsauslösender Genvarianten"

• Betreuung PG 572 "IMobSPi"

• Betreuung PG 572 "IMobSPi"

• Betreuung PG 567 "Computational Epigenomics"
• Betreuung Proseminar "DAP mit Python"

• Betreuung PG 567 "Computational Epigenomics"
• Betreuung Proseminar "DAP mit Python"

• Praktikum Computational Omics

• Übung Algorithmen auf Sequenzen

• Praktikum EINI

• Praktikum DAP2

• Resource-constrained analysis of spectrometry data
• Online peak parametrization in IMS measurements
• Prediction of spectra in IMS measurements

List of ongoing and completed Theses:

• Helge Michels (D): Bestimmung des Potentials volatiler Metabolite der Saccharomyces cerevisiae in silico, 2015
• Benjamin Borchert (B): Partitionierung von DNS-Reads anhand gegebener Strukturdefinitionen, 2015
• Tom Eckelmann (D): Probabilistisches Flowgram-String Alignment, 2014
• Till Hartmann (B): Automatisierte Bestimmung verwendeter Adapter bei DNA-Sequenzierung, 2014
• Henning Funke (B): Fast Analysis of MCC/IMS Data using GPGPU Programming, 2013

• Dominik Kopczynski, Sven Rahmann. An Online Peak Extraction Algorithm for Ion Mobility Spectrometry Data. Proceedings of the 14th Workshop on Algorithms in Bioinformatics (WABI 2014), Wrocław, Poland, 2014.
• Dominik Kopczynski, Jörg Ingo Baumbach, Sven Rahmann. Peak Modeling for Ion Mobility Spectrometry Measurements. Proceedings of the 20th European Signal Processing Conference (EUSIPCO 2012), Bucharest, Romania, 2012.

• Dominik Kopczynski, Sven Rahmann. An Online Peak Extraction Algorithm for Ion Mobility Spectrometry Data. Algorithms for Molecular Biology, 10(1):17, 2015.
• Dominik Kopczynski, Sven Rahmann. Using the Expectation Maximization Algorithm with Heterogeneous Mixture Components for the Analysis of Spectrometry Data. arXiv:1405.5501, (under review).
• Marianna D'Addario, Dominik Kopczynski, Jörg Ingo Baumbach, Sven Rahmann. A modular computational framework for automated peak extraction from ion mobility spectra. BMC Bioinformatics, 15(1):25, 2014.
• Anne-Christin Hauschild, Dominik Kopczynski, Marianna D'Addario, Jörg Ingo Baumbach, Sven Rahmann, Jan Baumbach. Peak Detection Method Evaluation for Ion Mobility Spectrometry by Using Machine Learning Approaches. Metabolites, p277-293, 2013. (Metabolites best paper award 2015)

• Dominik Kopczynski, Sven Rahmann. An Online Peak Extraction Algorithm for Ion Mobility Spectrometry Data. 18th German Conference on Bioinformatics (GCB 2014), Bielefeld Germany, 2014.
• Dominik Kopczynski, Sven Rahmann. A Memory-Efficient Data Structure for Pattern Matching in DNA with Backward Search. 17th German Conference on Bioinformatics (GCB 2013), Göttingen Germany, 2013.
• Dominik Kopczynski, Marianna D'Addario, Jörg Ingo Baumbach, Sven Rahmann. Automated Peak Extraction for MCC/IMS Measurements of Exhaled Breath. International Conference on Breath Research (Breath 2013), Wallerfangen Germany, 2013.
• Anne-Christin Hauschild, Dominik Kopczynski, Marianna D'Addario, Jörg Ingo Baumbach, Sven Rahmann, Jan Baumbach. Evaluation of Peak Detection Methods for MCC/IMS Measurements in Clinical Breath Studies. International Conference on Breath Research (Breath 2013), Wallerfangen Germany, 2013.
• Dominik Kopczynski, Sven Rahmann. An Automaton-Based View on Error-Tolerant Pattern Matching with Backward Search. 16th German Conference on Bioinformatics (GCB 2012), Jena Germany, 2012.
• Dominik Kopczynski, Sven Rahmann. Resource-Constrained Analysis of Spectrometry Data. At the Doktorantenkolleg Informatik Ruhr 2011, Valbert Germany, 2011.

• Peak Modeling for Ion Mobility Spectrometry Measurements. 14th Workshop on Knowledge Discovery, Data Mining and Machine Learning (KDML 2012), Dortmund, Germany, Sep. 12, 2012.

• Dominik Kopczynski. Datenreduktion und Merkmalsextraktion bei IMS-Messungen. Technische Universität Dortmund, 2011.

Currently I am a PhD student at TU Dortmund, Department of Computer Science, Chair of Algorithm Engineering within the group Bioinformatics for High-Throughput Technologies of Prof. Dr. Sven Rahmann. Between 2004 and the end of 2010, I studied computer science with a focus on intelligent systems and algorithmic at TU Dortmund.

• 01/2011 - today: PhD student at the Department of Computer Science, Chair of Algorithm Engineering within the group Bioinformatics for High-Throughput Technologies at TU Dortmund, Dortmund, Germany
• 10/2004 - 06/2010: Diploma student in Computer Science at TU Dortmund, Dortmund, Germany