| Room: | 209 |
| Phone: | +49 231 755-7745 |
| Fax: | +49 231 755-7740 |
| E-Mail: | marcel dot martin at tu dash dortmund dot de |
| ORCID: | http://orcid.org/0000-0002-0680-200X |
I am a PhD student at TU Dortmund, Department of Computer Science, Chair of Algorithm Engineering within the group Bioinformatics for High-Throughput Technologies of Prof. Dr. Sven Rahmann.
J.C. Czeschik and C. Voigt and Y. Alanay and B. Albrecht and A. Avci and D. FitzPatrick and D.R. Goudie and A.J. Hoogeboom and H. Kayserili and O.S. Kiper and A. Kuechler and V. Lopez-Gonzalez and M. Martin and S. Rahmann and B. Schweiger and M. Splitt and B. Wollnik and H.-J. Lüdecke and M. Zeschnigk and D. Wieczorek.
Clinical and mutation data in 12 patients with the clinical diagnosis of Nager syndrome
Human Genetics, Springer-Verlag, 2013, 1-14.
DOI: 10.1007/s00439-013-1295-2
Sven Rahmann, Marcel Martin, Johannes H. Schulte, Johannes Köster, Tobias Marschall, Alexander Schramm.
Identifying transcriptional miRNA biomarkers by integrating high-throughput sequencing and real-time PCR data
Methods 2012.
DOI: 10.1016/j.ymeth.2012.10.005
A. Schramm, B. Schowe, K. Fielitz, M. Heilmann, M. Martin, T. Marschall, J. Köster, J. Vandesompele, J. Vermeulen, K. de Preter, J. Koster, R. Versteeg, R. Noguera, F. Speleman, S. Rahmann, A. Eggert, K. Morik, J. H. Schulte
Exon-level expression analyses identify MYCN and NTRK1 as major determinants of alternative exon usage and robustly predict primary neuroblastoma outcome
British Journal of Cancer, 2012, 107(8):1409-1417.
DOI: http://dx.doi.org/10.1038/bjc.2012.391
Alexander Schramm, Johannes Köster, Tobias Marschall, Marcel Martin, Melanie Schwermer, Kathrin Fielitz, Gabriele Büchel, Matthias Barann, Daniela Esser, Philip Rosenstiel, Sven Rahmann, Angelika Eggert, Johannes H. Schulte
Next-generation RNA sequencing reveals differential expression of MYCN target genes and suggests the mTOR pathway as a promising therapy target in MYCN-amplified neuroblastoma
In International Journal of Cancer, 2012
DOI: http://dx.doi.org/10.1002/ijc.27787
Jing-Woei Li, Keith Robison, Marcel Martin, Andreas Sjödin, Björn Usadel, Matthew Young, Eric C. Olivares, Dan M. Bolser.
SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis
Nucleic Acids Research, 2012, 40(D1):D1313-D1317.
DOI: http://dx.doi.org/10.1093/nar/gkr1058
Marcel Martin.
Cutadapt removes adapter sequences from high-throughput sequencing reads
In EMBnet.journal, 17, May 2011
Johannes H. Schulte, Tobias Marschall, Marcel Martin, Philipp Rosenstiel, Pieter Mestdagh, Stefanie Schlierf, Theresa Thor, Jo Vandesompele, Angelika Eggert, Stefan Schreiber, Sven Rahmann and Alexander Schramm.
Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma
DOI: 10.1093/nar/gkq342
Marcel Martin, Jonathan Maycock, Florian Paul Schmidt, Oliver Kramer.
Recognition of Manual Actions Using Vector Quantization and Dynamic Time Warping.
In Proceedings of 5th Int. Conf. on Hybrid Artificial Intelligence Systems (HAIS 2010) 221-228.
Michael Zeschnigk, Marcel Martin, Gisela Betzl, Andreas Kalbe, Caroline Sirsch, Karin Buiting, Stephanie Gross, Epameinondas Fritzilas, Bruno Frey, Sven Rahmann and Bernhard Horsthemke.
Massive parallel bisulfite sequencing of CG-rich DNA fragments reveals that methylation of many X-chromosomal CpG islands in female blood DNA is incomplete.
DOI: 10.1093/hmg/ddp054
Sebastian Böcker, Zsuzsanna Lipták, Marcel Martin, Anton Pervukhin, Henner Sudek.
DECOMP—from interpreting Mass Spectrometry peaks to solving the Money Changing Problem.
Bioinformatics 24(4):591-593 (2008).
DOI: 10.1093/bioinformatics/btm631
Sven Rahmann, Tobias Wittkop, Jan Baumbach, Marcel Martin, Anke Truß, and Sebastian Böcker.
Exact and Heuristic Algorithms for Weighted Cluster Editing.
In Proceedings of the Conference Computational Systems Bioinformatics, volume 6, pages 391–401, August 2007.
Thomas Plötz, Gernot A Fink, Peter Husemann, Sven Kanies, Kai Lienemann, Tobias Marschall, Marcel Martin, Lars Schillingmann, Matthias Steinrücken, Henner Sudek.
Automatic Detection of Song Changes in Music Mixes Using Stochastic Models.
Proc. of the Int. Conf. on Pattern Recognition (ICPR'06)
DOI: 10.1109/ICPR.2006.297
Tobias Marschall, Marcel Martin, and Sven Rahmann. Extending SeqAn with a BWT-based suffix array construction. In Knut Reinert and Andreas Gogol-Döring, editors, Biological Sequence Analysis Using the Seqan C++ Library. CRC Press Inc, 2009. ISBN 978-1420076233.
Alignment of Flowgrams to Strings by M. Martin, presented at German Conference on Bioinformatics (GCB) 2012, Jena, Germany (second place poster award)
From cutadapt to sequencetools (sqt): a versatile toolset for sequencing projects M. Martin and S. Rahmann
A Symbol-Oriented Approach to Motion Analysis by O. Kramer, J. Maycock, F. P. Schmidt, and M. Martin, Intelligence and Action II - New Perspectives in Dance and Cognitive Science, (2009)
A Heuristic Clustering Algorithm Using Graph Transitivity by M. Martin, S. Rahmann, presented at RECOMB 2008, Singapore
MADALGO Summer School on Data Stream Algorithms (2007)
Sorting by block interchanges: http://bibiserv.techfak.uni-bielefeld.de/sbbi/
Die Folien wurden im Markdown-Format geschrieben und mit pandoc in eine S5-Präsentation im HTML-Format konvertiert. Die Befehlzeile lautet:
pandoc --smart -s -m --offline -t s5 erste-schritte-mit-git.md | sed 's|text-transform: capitalize;||' > erste-schritte-mit-git.html
Dieser Vortrag wurde von mir auf der PyCon DE 2011 in Leipzig gehalten.