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CANADA: complement

complement (version 1.0)

This program reads nucleic acid sequences and writes their Watson-Crick complements
to standard output. The sequences are usually read from an input file. If no filename is
given, complement works in interactive mode. In this mode the user is prompted to type
in a sequence, and the complement is put out immediately. You can leave the interactive
mode (and exit the program) by entering @.

See the manual for a more detailed description of this tool.

Download      

The program: complement.exe (248 KB)
Example input files: example_seqs.txt (1 KB) example_seqs_w_IDs.txt (1 KB)

Example

An interactive session tolerating degenerate bases can look like this:

>complement -iupac
Enter sequence (@ to exit):
aaggtccc
gggacctt

Enter sequence (@ to exit):
acctttyyrsswww
wwwssyrraaaggt

Enter sequence (@ to exit):
@
last modification: Jun/20/2007

  
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