All Classes
ABINITFormat
AbstractAtomicDescriptor
AbstractAtomPairDescriptor
AbstractAWTDrawVisitor
AbstractBondDescriptor
AbstractDifference
AbstractDifferenceList
AbstractDiscretePartitionRefiner
AbstractDiscretePartitionRefiner.Result
AbstractEquitablePartitionRefiner
AbstractEquitablePartitionRefiner.SplitOrder
AbstractFontManager
AbstractGeneratorParameter
AbstractMCS
AbstractMCSAlgorithm
AbstractMolecularDescriptor
AbstractReactionLabeller
AbstractRenderer
AbstractResourceFormat
AbstractSelection
AbstractSubGraph
AbstractValidator
Aces2Format
AcidicGroupCountDescriptor
AdductFormula
AdductFormula
AdductionLPMechanism
AdductionPBMechanism
AdductionProtonLPReaction
AdductionProtonPBReaction
AdductionSodiumLPReaction
ADFFormat
AdjacencyMatrix
AlchemyFormat
Algorithm
AliphaticAtom
AliphaticSymbolAtom
AllCycles
AllPairsShortestPaths
AllRingsFinder
AllRingsFinder.Threshold
ALOGPDescriptor
AminoAcid
AminoAcid
AminoAcidCountDescriptor
AminoAcidManipulator
AminoAcids
AngularMomentum
AnyAtom
AnyOrderQueryBond
APolDescriptor
AromaticAtom
AromaticAtomsCountDescriptor
AromaticBondsCountDescriptor
Aromaticity
AromaticityCalculator
AromaticOrSingleQueryBond
AromaticQueryBond
AromaticSymbolAtom
ArrowElement
Association
Atom
Atom
AtomContainer
AtomContainer
AtomContainerAtomPermutor
AtomContainerAtomPermutor
AtomContainerBondPermutor
AtomContainerBoundsGenerator
AtomContainerComparator
AtomContainerComparatorBy2DCenter
AtomContainerDiff
AtomContainerManipulator
AtomContainerPermutor
AtomContainerPrinter
AtomContainerRenderer
AtomContainerSet
AtomContainerSet
AtomContainerSetManipulator
AtomCountDescriptor
AtomDegreeDescriptor
AtomDiff
AtomDiscretePartitionRefiner
AtomEncoder
AtomEquitablePartitionRefiner
AtomHashGenerator
AtomHybridizationDescriptor
AtomHybridizationVSEPRDescriptor
AtomicNumberAtom
AtomicNumberDifferenceDescriptor
AtomicProperties
AtomMappingTools
AtomMassGenerator
AtomMassSymbolElement
AtomMatcher
AtomMatcher
AtomNumberGenerator
AtomNumberGenerator.AtomColorer
AtomNumberGenerator.AtomNumberTextColor
AtomNumberGenerator.ColorByType
AtomNumberGenerator.Offset
AtomNumberGenerator.WillDrawAtomNumbers
AtomPlacer
AtomPlacer3D
AtomSignature
AtomSymbolElement
AtomTetrahedralLigandPlacer3D
AtomTools
AtomType
AtomType
AtomTypeAwareSaturationChecker
AtomTypeCharges
AtomTypeDiff
AtomTypeFactory
AtomTypeHandler
AtomTypeHybridizationDifference
AtomTypeManipulator
AtomTypeMapper
AtomTypeReader
AtomTypeTools
AtomValenceDescriptor
AtomValenceTool
AttachedGroup
AutocorrelationDescriptorCharge
AutocorrelationDescriptorMass
AutocorrelationDescriptorPolarizability
AverageBondLengthCalculator
AWTDrawVisitor
AWTFontManager
BadMatrixFormatException
BasicAtomEncoder
BasicAtomGenerator
BasicAtomGenerator.AtomColor
BasicAtomGenerator.AtomColorer
BasicAtomGenerator.AtomRadius
BasicAtomGenerator.ColorByType
BasicAtomGenerator.CompactAtom
BasicAtomGenerator.CompactShape
BasicAtomGenerator.KekuleStructure
BasicAtomGenerator.Shape
BasicAtomGenerator.ShowEndCarbons
BasicAtomGenerator.ShowExplicitHydrogens
BasicBondGenerator
BasicBondGenerator.BondDistance
BasicBondGenerator.BondWidth
BasicBondGenerator.DefaultBondColor
BasicBondGenerator.TowardsRingCenterProportion
BasicBondGenerator.WedgeWidth
BasicGenerator
BasicGroupCountDescriptor
BasicSceneGenerator
BasicSceneGenerator.ArrowHeadWidth
BasicSceneGenerator.BackgroundColor
BasicSceneGenerator.BondLength
BasicSceneGenerator.FitToScreen
BasicSceneGenerator.FontName
BasicSceneGenerator.ForegroundColor
BasicSceneGenerator.Margin
BasicSceneGenerator.Scale
BasicSceneGenerator.ShowMoleculeTitle
BasicSceneGenerator.ShowTooltip
BasicSceneGenerator.UseAntiAliasing
BasicSceneGenerator.UsedFontStyle
BasicSceneGenerator.ZoomFactor
BasicValidator
BCUTDescriptor
BFSShortestPath
BGFFormat
BiconnectivityInspector
BinaryTree
BioPolymer
BioPolymer
BitSetFingerprint
BKKCKCF
Bond
Bond
BondCountDescriptor
BondDiff
BondDiscretePartitionRefiner
BondEnergies
BondEnergy
BondEquitablePartitionRefiner
BondManipulator
BondMatcher
BondMatcher
BondOrderDifference
BondPartialPiChargeDescriptor
BondPartialSigmaChargeDescriptor
BondPartialTChargeDescriptor
BondSigmaElectronegativityDescriptor
BondsToAtomDescriptor
BondTools
BooleanArrayDifference
BooleanDifference
BooleanIOSetting
BooleanResult
BooleanResultType
Bounds
BoundsCalculator
BoundsGenerator
BoundsGenerator.BoundsColor
BPolDescriptor
BremserOneSphereHOSECodePredictor
BSFormat
Bspt
Bspt.Tuple
CacaoCartesianFormat
CacaoInternalFormat
CACheFormat
Canon
CanonicalLabeler
CanonicalLabellingAdaptor
CarbonTypesDescriptor
CarbonylEliminationReaction
CASNumber
CDK
CDK
CDK2DAtomColors
CDKAtomColors
CDKAtomTypeMatcher
CDKBasedAtomTypeConfigurator
CDKConstants
CDKConvention
CDKDictionaryReferences
CDKException
CDKHueckelAromaticityDetector
CDKHydrogenAdder
CDKMCS
CDKMCSHandler
CDKOWLFormat
CDKOWLReader
CDKOWLWriter
CDKRGraph
CDKRMap
CDKRMapHandler
CDKRNode
CDKSourceCodeFormat
CDKSourceCodeWriter
CDKSubGraphHandler
CDKUtilities
CDKValencyChecker
CDKValidator
ChargeGroup
ChargeRule
Chem3D_Cartesian_1Format
Chem3D_Cartesian_2Format
ChemDrawFormat
ChemFile
ChemFile
ChemFileManipulator
ChemGraph
ChemicalFilters
ChemModel
ChemModel
ChemModelManipulator
ChemModelRenderer
ChemObject
ChemObject
ChemObjectChangeEvent
ChemObjectDiff
ChemObjectDifference
ChemObjectIO
ChemSequence
ChemSequence
ChemSequenceManipulator
ChemtoolFormat
ChiChainDescriptor
ChiClusterDescriptor
ChiPathClusterDescriptor
ChiPathDescriptor
ChiralityAtom
CIFFormat
CIFReader
CIPLigandRule
CIPTool
CIPTool.CIP_CHIRALITY
CircularFingerprinter
CircularFingerprinter.FP
Close
ClosedShellJob
CMLCoreModule
CMLErrorHandler
CMLFormat
CMLHandler
CMLModuleStack
CMLReactionModule
CMLReader
CMLResolver
CMLRSSFormat
CMLWriter
Complex
ComponentGrouping
ConformerContainer
ConjugatedPiSystemsDetector
ConnectedComponents
ConnectionMatrix
ConnectivityChecker
Convertor
Convertor
CovalentRadiusDescriptor
CPKAtomColors
CPSADescriptor
CRK2DFormat
CRK3DFormat
CrossoverMachine
Crystal
Crystal
CrystalGeometryTools
CrystClustFormat
CrystClustReader
CrystClustWriter
CTFileQueryBond
CTFileQueryBond.Type
CTXFormat
CTXReader
CubicTo
CustomSerializer
CycleBasis
CycleFinder
Cycles
CyclicVertexSearch
DaltonFormat
DataFeatures
DataFeaturesTool
DeAromatizationTool
DebugAdductFormula
DebugAminoAcid
DebugAtom
DebugAtomContainer
DebugAtomContainerSet
DebugAtomType
DebugBioPolymer
DebugBond
DebugChemFile
DebugChemModel
DebugChemObject
DebugChemObjectBuilder
DebugChemSequence
DebugCrystal
DebugElectronContainer
DebugElement
DebugFragmentAtom
DebugIsotope
DebugLonePair
DebugMapping
DebugMolecularFormula
DebugMolecularFormulaSet
DebugMonomer
DebugPDBAtom
DebugPDBMonomer
DebugPDBPolymer
DebugPDBStructure
DebugPolymer
DebugPseudoAtom
DebugReaction
DebugReactionScheme
DebugReactionSet
DebugRing
DebugRingSet
DebugSingleElectron
DebugStrand
DebugSubstance
DeduceBondSystemTool
DefaultBondMatcher
DefaultChemObjectBuilder
DefaultChemObjectReader
DefaultChemObjectWriter
DefaultEventChemObjectReader
DefaultIteratingChemObjectReader
DefaultMatcher
DefaultMCSPlusAtomMatcher
DefaultRandomAccessChemObjectReader
DefaultRGraphAtomMatcher
DefaultVFAtomMatcher
DefaultVFBondMatcher
DescriptorEngine
DescriptorException
DescriptorSpecification
DescriptorValue
Dictionary
DictionaryDatabase
DictionaryHandler
DictionaryValidator
DictRef
DisjointSetForest
DistanceMoment
DistanceToAtomDescriptor
DMol3Format
DOCK5Format
DoubleArrayResult
DoubleArrayResultType
DoubleBondAcceptingAromaticityDetector
DoubleBondElementEncoderFactory
DoubleBondStereochemistry
DoubleDifference
DoubleResult
DoubleResultType
DynamicFactory
DynamicFactory.BasicCreator
DynamicFactory.ConstructorKey
DynamicFactory.CreationModifier
DynamicFactory.Creator
DynamicFactory.DefaultInterfaceProvider
DynamicFactory.InterfaceProvider
EccentricConnectivityIndexDescriptor
EdgeBuilder
EffectiveAtomPolarizabilityDescriptor
ElectronContainer
ElectronContainer
ElectronContainerDiff
ElectronDonation
Electronegativity
ElectronImpactNBEReaction
ElectronImpactPDBReaction
ElectronImpactSDBReaction
Element
Element
ElementComparator
ElementDiff
ElementGroup
ElementRule
Elements
EnsembleHashGenerator
Entry
EntryReact
EnzymeResidueLocator
EquivalentClassPartitioner
EssentialCycles
EStateAtomTypeMatcher
EStateFingerprinter
EStateFragments
EventCMLHandler
EventCMLReader
ExactMapping
ExhaustiveFragmenter
ExplicitConnectionAtom
ExtAtomContainerManipulator
ExtendedAtomGenerator
ExtendedAtomGenerator.ShowAtomTypeNames
ExtendedAtomGenerator.ShowImplicitHydrogens
ExtendedFingerprinter
ExtendedTetrahedral
FenskeHall_ZMatrixFormat
FiguerasSSSRFinder
FinalMappings
Fingerprinter
FingerprinterTool
FingerprintFormat
FixBondOrdersTool
FMFDescriptor
ForceFieldConfigurator
FormalChargeAtom
FormatFactory
FormatStringBuffer
FortranFormat
FourierGridBasis
FractionalPSADescriptor
FragmentAtom
FragmentAtom
FragmentComplexityDescriptor
FragmentUtils
GamessFormat
GamessReader
GasteigerMarsiliPartialCharges
GasteigerPEPEPartialCharges
Gaussian03Format
Gaussian03Reader
Gaussian90Format
Gaussian92Format
Gaussian94Format
Gaussian95Format
Gaussian98Format
Gaussian98Reader
GaussianInputFormat
GaussianInputWriter
GaussiansBasis
GeneralPath
GenerateCompatibilityGraph
GeometricCumulativeDoubleBondFactory
GeometricDoubleBondEncoderFactory
GeometricTetrahedralEncoderFactory
Geometry3DValidator
GeometryTools
GeometryTools.CoordinateCoverage
GeometryUtil
GeometryUtil.CoordinateCoverage
GhemicalMMFormat
GhemicalMMReader
GhemicalSPMFormat
GIMatrix
GraphOnlyFingerprinter
GraphRendererModel
GraphUtil
GraphUtil.EdgeToBondMap
GravitationalIndexDescriptor
GridGenerator
GROMOS96Format
HanserRingFinder
HashGeneratorMaker
HBondAcceptorCountDescriptor
HBondDonorCountDescriptor
HeterolyticCleavageMechanism
HeterolyticCleavagePBReaction
HeterolyticCleavageSBReaction
HighlightGenerator
HighlightGenerator.HighlightPalette
HighlightGenerator.HighlightRadius
HighlightGenerator.Palette
HINFormat
HINReader
HINWriter
HomolyticCleavageMechanism
HomolyticCleavageReaction
HOSECodeAnalyser
HOSECodeGenerator
HuLuIndexTool
HybridizationFingerprinter
HybridizationNumberAtom
HybridizationRatioDescriptor
HydrogenAtom
HydrogenPlacer
HyperconjugationReaction
IAdductFormula
IAminoAcid
IAtom
IAtomColorer
IAtomContainer
IAtomContainerSet
IAtomicDescriptor
IAtomPairDescriptor
IAtomType
IAtomType.Hybridization
IAtomTypeConfigurator
IAtomTypeGuesser
IAtomTypeMatcher
IBasis
IBioPolymer
IBitFingerprint
IBond
IBond.Order
IBond.Stereo
IBondDescriptor
ICanonicalMoleculeLabeller
ICanonicalReactionLabeller
ICDKChangeListener
ICDKObject
ICDKSelectionChangeListener
IChargeCalculator
IChemFile
IChemFormat
IChemFormatMatcher
IChemFormatMatcher.MatchResult
IChemModel
IChemObject
IChemObjectBuilder
IChemObjectChangeEvent
IChemObjectIO
IChemObjectIOListener
IChemObjectListener
IChemObjectReader
IChemObjectReader.Mode
IChemObjectReaderErrorHandler
IChemObjectSelection
IChemObjectWriter
IChemSequence
ICMLConvention
ICMLCustomizer
ICMLModule
ICountFingerprint
ICrystal
IDCreator
IDeduceBondOrderTool
IDescriptor
IDescriptorResult
IDifference
IDifferenceList
IDoubleBondStereochemistry
IDoubleBondStereochemistry.Conformation
IDrawVisitor
IEdge
IElectronContainer
IElectronicPropertyCalculator
IElement
IEquitablePartitionRefiner
IEventChemObjectReader
IFinalMapping
IFingerprinter
IFontManager
IFontManager.FontStyle
IFragmentAtom
IFragmenter
IFunction
IGenerator
IGeneratorParameter
IGraphMatrix
IImplementationSpecification
IIsotope
IIteratingChemObjectReader
ILigand
ILoggingTool
ILonePair
IMapper
IMapping
IMatrix
IMCSBase
IMolecularDescriptor
IMolecularFormula
IMolecularFormulaSet
IMonomer
IMouseEventRelay
ImplicitHCountAtom
ImplicitHydrogenLigand
INChIContentProcessorTool
INChIFormat
InChIGenerator
InChIGeneratorFactory
INChIHandler
InChINumbersTools
INChIPlainTextFormat
INChIPlainTextReader
INChIReader
InChITautomerGenerator
InChIToStructure
IncorrectUseOfCDKCoreClassError
IndexOutOfBoundsException
InductiveAtomicHardnessDescriptor
InductiveAtomicSoftnessDescriptor
InductivePartialCharges
INode
IntArrayCountFingerprint
IntArrayFingerprint
IntegerArrayResult
IntegerArrayResultType
IntegerDifference
IntegerIOSetting
IntegerResult
IntegerResultType
Intractable
InvalidSmilesException
InverseSymbolSetQueryAtom
InvPair
IonizationPotentialTool
IOSetting
IOSetting.Importance
IParameterReact
IPAtomicHOSEDescriptor
IPAtomicLearningDescriptor
IPBondLearningDescriptor
IPDBAtom
IPDBMonomer
IPDBPolymer
IPDBStructure
IPMolecularLearningDescriptor
IPolymer
IPseudoAtom
IQuery
IQueryAtom
IQueryAtomContainer
IQueryBond
IQueryCompiler
IRandomAccessChemObjectReader
IRDFWeightFunction
IReaction
IReaction.Direction
IReactionMechanism
IReactionProcess
IReactionScheme
IReactionSet
IReaderListener
IRenderer
IRenderingElement
IRenderingVisitor
IResourceFormat
IRGroupQuery
IRing
IRingSet
IRule
ISequenceSubRule
ISetting
ISimpleChemObjectReader
ISingleElectron
IsoAlkanes
Isomorphism
IsomorphismTester
Isotope
Isotope
IsotopeContainer
IsotopeDiff
IsotopeFactory
IsotopeHandler
IsotopePattern
IsotopePatternGenerator
IsotopePatternManipulator
IsotopePatternRule
IsotopePatternSimilarity
IsotopeReader
Isotopes
IsProtonInAromaticSystemDescriptor
IsProtonInConjugatedPiSystemDescriptor
IState
IStereoElement
IStrand
IStructureGenerationListener
ISubstance
IteratingMDLConformerReader
IteratingPCCompoundASNReader
IteratingPCCompoundXMLReader
IteratingPCSubstancesXMLReader
IteratingSDFReader
IteratingSMILESReader
ITetrahedralChirality
ITetrahedralChirality.Stereo
IValencyChecker
IValidator
IVector
IViewEventRelay
IWriterListener
JaguarFormat
JJTSMARTSParserState
JMEFormat
JMOLANIMATIONConvention
KabschAlignment
KappaShapeIndicesDescriptor
Kekulization
KierHallSmartsDescriptor
KlekotaRothFingerprinter
LabelContainer
LargestChainDescriptor
LargestPiSystemDescriptor
LengthOverBreadthDescriptor
Ligand
LineElement
LineElement.LineType
LineTo
LingoFingerprinter
LingoSimilarity
LoggingTool
LoggingToolFactory
LogicalOperatorAtom
LogicalOperatorBond
LonePair
LonePair
LonePairDiff
LonePairElectronChecker
LonePairGenerator
LongestAliphaticChainDescriptor
MACCSFingerprinter
MacroModelFormat
MannholdLogPDescriptor
Mapping
Mapping
MappingGenerator
MappingGenerator.AtomAtomMappingLineColor
MappingGenerator.MappingLineWidth
MappingGenerator.ShowAtomAtomMapping
Mappings
MassAtom
MassToFormulaTool
Match
Matching
MathTools
Matrix
MatrixNotInvertibleException
McGregor
McGregorChecks
McgregorHelper
MCSPlus
MCSPlusHandler
MDEDescriptor
MDLFormat
MDLMolConvention
MDLReader
MDLRXNFormat
MDLRXNReader
MDLRXNV2000Reader
MDLRXNV3000Format
MDLRXNV3000Reader
MDLRXNWriter
MDLV2000Format
MDLV2000Reader
MDLV2000Writer
MDLV2000Writer.SPIN_MULTIPLICITY
MDLV3000Format
MDLV3000Reader
MDMolecule
MDMoleculeConvention
MDMoleculeCustomizer
MinimalPathIterator
MinimumCycleBasis
MM2AtomTypeMatcher
MM2BasedAtomTypePattern
MM2BasedParameterSetReader
MMElementRule
MMElementRule.Database
MMElementRule.RangeMass
MMFF94AtomTypeMatcher
MMFF94BasedAtomTypePattern
MMFF94BasedParameterSetReader
MMFF94ParametersCall
MMFF94PartialCharges
MMODFormat
ModelBuilder3D
Mol2Format
Mol2Reader
Mol2Writer
MolecularFormula
MolecularFormula
MolecularFormulaChecker
MolecularFormulaGenerator
MolecularFormulaManipulator
MolecularFormulaRange
MolecularFormulaRangeManipulator
MolecularFormulaSet
MolecularFormulaSet
MolecularFormulaSetManipulator
MoleculeBuilder
MoleculeFactory
MoleculeFeaturesTool
MoleculeFromSignatureBuilder
MoleculeGraphs
MoleculeHashGenerator
MoleculeSanityCheck
MoleculeSetManipulator
MoleculeSetRenderer
MoleculeSignature
MoleculeSignatureLabellingAdaptor
MolHandler
MomentOfInertiaDescriptor
Monomer
Monomer
MOPAC2002Format
MOPAC2007Format
MOPAC2009Format
MOPAC2012Format
MOPAC7Format
MOPAC7InputFormat
Mopac7Reader
Mopac7Writer
MOPAC93Format
MOPAC97Format
MorganNumbersTools
MoSSOutputFormat
MoSSOutputReader
MoveTo
MPQCFormat
MurckoFragmenter
NeighborList
NitrogenRule
Node
NodeBuilder
NomParser
NomParserConstants
NomParserTokenManager
NonCHHeavyAtom
Normalizer
NoSuchAtomException
NoSuchAtomTypeException
NumericalSurface
NWChemFormat
OneElectronJob
OptionIOSetting
Orbit
Orbitals
OrderQueryBond
OrderQueryBond
OrderQueryBondOrderOnly
OvalElement
OverlapResolver
OWLAtomTypeHandler
OWLAtomTypeMappingHandler
OWLAtomTypeMappingReader
OWLAtomTypeReader
OWLBasedAtomTypeConfigurator
OWLFile
OWLReact
ParameterReact
ParseException
ParseException
PartialAtomicChargeColors
PartialFilledStructureMerger
PartialPiChargeDescriptor
PartialSigmaChargeDescriptor
PartialTChargeMMFF94Descriptor
PartialTChargePEOEDescriptor
Partition
PathBuilder
PathEdge
PathElement
PathElement
PathGraph
PathTools
Pattern
PCCompoundASNReader
PCCompoundXMLReader
PCModelFormat
PCSubstanceXMLReader
PDBAtom
PDBAtom
PDBAtomCustomizer
PDBConvention
PDBFormat
PDBMLFormat
PDBMonomer
PDBMonomer
PDBPolymer
PDBPolymer
PDBReader
PDBStrand
PDBStructure
PDBStructure
PDBWriter
PeriodicGroupNumberAtom
PeriodicTable
PeriodicTablePositionDescriptor
Permutation
PermutationGroup
PermutationGroup.Backtracker
Permutor
Permutor
PetitjeanNumberDescriptor
PetitjeanShapeIndexDescriptor
PharmacophoreAngleBond
PharmacophoreAtom
PharmacophoreBond
PharmacophoreMatcher
PharmacophoreQuery
PharmacophoreQueryAngleBond
PharmacophoreQueryAtom
PharmacophoreQueryBond
PharmacophoreUtils
PhysicalConstants
PiBondingMovementReaction
PiContactDetectionDescriptor
PiElectronegativity
PiElectronegativityDescriptor
PMPConvention
PMPFormat
PMPReader
Point
Point2dDifference
Point3dDifference
Polarizability
Polymer
Polymer
PostFilter
POVRayFormat
PQSChemFormat
Primes
ProblemMarker
ProductsBoxGenerator
Projection
Projector
PropertiesListener
ProteinBuilderTool
ProteinPocketFinder
ProtonAffinityHOSEDescriptor
ProtonTotalPartialChargeDescriptor
PseudoAtom
PseudoAtom
PubChemASNFormat
PubChemCompoundsXMLFormat
PubChemCompoundXMLFormat
PubchemFingerprinter
PubChemFormat
PubChemSubstancesASNFormat
PubChemSubstancesXMLFormat
PubChemSubstanceXMLFormat
PubChemXMLHelper
QChemFormat
QSARConvention
QSARCustomizer
QuadTo
Quaternion
QueryAtom
QueryAtomContainer
QueryAtomContainerCreator
QueryBond
QueryChemObject
QueryCompiler
QueryProcessor
Queue
RadicalChargeSiteInitiationHReaction
RadicalChargeSiteInitiationReaction
RadicalGenerator
RadicalSiteHrAlphaReaction
RadicalSiteHrBetaReaction
RadicalSiteHrDeltaReaction
RadicalSiteHrGammaReaction
RadicalSiteInitiationHReaction
RadicalSiteInitiationReaction
RadicalSiteIonizationMechanism
RadicalSiteRearrangementMechanism
RadicalSiteRrAlphaReaction
RadicalSiteRrBetaReaction
RadicalSiteRrDeltaReaction
RadicalSiteRrGammaReaction
RandomAccessReader
RandomAccessSDFReader
RandomGenerator
RandomNumber
RandomNumbersTool
RasmolColors
RawCopyFormat
RDBERule
RDFCalculator
RDFProtonDescriptor_G3R
RDFProtonDescriptor_GDR
RDFProtonDescriptor_GHR
RDFProtonDescriptor_GHR_topol
RDFProtonDescriptor_GSR
ReactantsBoxGenerator
Reaction
Reaction
ReactionArrowGenerator
ReactionBoxGenerator
ReactionChain
ReactionEngine
ReactionManipulator
ReactionPlusGenerator
ReactionRenderer
ReactionSceneGenerator
ReactionSceneGenerator.ArrowHeadWidth
ReactionSceneGenerator.ShowReactionBoxes
ReactionScheme
ReactionScheme
ReactionSchemeManipulator
ReactionSet
ReactionSet
ReactionSetManipulator
ReactionSetRenderer
ReactionSpecification
ReaderEvent
ReaderFactory
RearrangementAnionReaction
RearrangementCationReaction
RearrangementChargeMechanism
RearrangementLonePairReaction
RearrangementRadicalReaction
RebondTool
RectangleElement
RecursiveSmartsAtom
RelevantCycles
RemovingSEofBMechanism
RemovingSEofNBMechanism
RendererModel
RendererModel.ColorHash
RendererModel.ExternalHighlightColor
RendererModel.SelectionColor
Residue
RGraph
RGroup
RGroupList
RGroupQuery
RGroupQueryFormat
RGroupQueryReader
RGroupQueryWriter
Ring
Ring
RingBond
RingElement
RingFilter
RingFinder
RingGenerator
RingGenerator.CDKStyleAromaticity
RingGenerator.MaxDrawableAromaticRing
RingGenerator.RingProportion
RingGenerator.ShowAromaticity
RingIdentifierAtom
RingManipulator
RingMembershipAtom
RingPartitioner
RingPlacer
RingSearch
RingSet
RingSet
RingSetManipulator
RingSizeComparator
RMap
RNode
RotatableBondsCountDescriptor
RssWriter
RuleOfFiveDescriptor
SaturationChecker
SDFFormat
SDFWriter
SelectionVisibility
SetReactionCenter
SettingManager
SharingAnionReaction
SharingChargeDBReaction
SharingChargeSBReaction
SharingElectronMechanism
SharingLonePairReaction
ShelXFormat
ShelXReader
ShelXWriter
ShortestPathFingerprinter
ShortestPaths
ShortestPathWalker
SigmaElectronegativityDescriptor
SignatureFingerprinter
SignatureQuotientGraph
SignatureReactionCanoniser
SilentChemObjectBuilder
SimpleAtomCanonicalizer
SimpleAtomComparator
SimpleBasisSet
SimpleCharStream
SimpleCharStream
SimpleCycle
SimpleCycleBasis
SingleElectron
SingleElectron
SingleElectronDiff
SingleMapping
SingleMappingHandler
SingleStructureRandomGenerator
SmallestRingAtom
SmallRingDescriptor
Smarts2MQLVisitor
SMARTSAtom
SMARTSBond
SmartsDumpVisitor
SMARTSFormat
SmartsMatchers
SMARTSParser
SMARTSParserConstants
SMARTSParserTokenManager
SMARTSParserTreeConstants
SMARTSParserVisitor
SmartsPattern
SMARTSQueryTool
SmartsQueryVisitor
SmartsStereoMatch
SMILESFIXFormat
SMILESFormat
SmilesGenerator
SmilesParser
SmilesReactionCanoniser
SMILESReader
SmilesValencyChecker
SMILESWriter
SMSDNormalizer
SpanningTree
SpartanFormat
SSSRFinder
StabilizationCharges
StabilizationPlusChargeDescriptor
StandardGenerator
StandardGenerator.AnnotationColor
StandardGenerator.AnnotationDistance
StandardGenerator.AnnotationFontScale
StandardGenerator.AtomColor
StandardGenerator.BondSeparation
StandardGenerator.DashSection
StandardGenerator.FancyBoldWedges
StandardGenerator.FancyHashedWedges
StandardGenerator.HashSpacing
StandardGenerator.Highlighting
StandardGenerator.HighlightStyle
StandardGenerator.OuterGlowWidth
StandardGenerator.StrokeRatio
StandardGenerator.SymbolMarginRatio
StandardGenerator.Visibility
StandardGenerator.WaveSpacing
StandardGenerator.WedgeRatio
StandardSubstructureSets
StereoBond
StereoBond.Direction
Stereocenters
Stereocenters.Stereocenter
Stereocenters.Type
StereoElementFactory
StereoEncoder
StereoEncoderFactory
StereoTool
StereoTool.SquarePlanarShape
StereoTool.StereoClass
StereoTool.TetrahedralSign
Strand
Strand
StringDifference
StringIOSetting
StructGenAtomTypeGuesser
StructGenMatcher
StructureDiagramGenerator
StructureResonanceGenerator
Substance
Substance
SubstructureFingerprinter
SVGFormat
SwingEventRelay
SwingGUIListener
SwingMouseEventRelay
SwissArmyKnife
SybylAtomTypeMatcher
SybylDescriptorFormat
SymbolAndChargeQueryAtom
SymbolChargeIDQueryAtom
SymbolQueryAtom
SymbolSetQueryAtom
SymbolVisibility
SystemOutLoggingTool
TaeAminoAcidDescriptor
Tanimoto
TargetProcessor
TargetProperties
TautomerizationMechanism
TautomerizationReaction
TemplateExtractor
TemplateHandler
TemplateHandler3D
Tessellate
TestClass
TestMethod
TetrahedralChirality
TetrahedralElementEncoderFactory
TextElement
TextGroupElement
TextGroupElement.Position
TextGUIListener
TimeManager
TimeOut
TinkerMM2Format
TinkerXYZFormat
Token
Token
TokenMgrError
TokenMgrError
ToleranceRangeRule
TopologicalMatrix
TotalConnectionAtom
TotalHCountAtom
TotalRingConnectionAtom
TotalValencyAtom
TPSADescriptor
Triangle
TripletShortCycles
TurboMoleFormat
TXTBasedAtomTypeConfigurator
Type
Ullmann
UndoAdapter
UniChemXYZFormat
UniColor
UniversalIsomorphismTester
UnsupportedChemObjectException
VABCDescriptor
VABCVolume
VAdjMaDescriptor
ValidationReport
ValidationTest
ValidatorEngine
VASPFormat
VASPReader
VdWRadiusDescriptor
Vector
VentoFoggia
VFAtomMatcher
VFBondMatcher
VFlibMCSHandler
VFlibSubStructureHandler
VFlibTurboHandler
VFMapper
VFMCSMapper
VFQueryBuilder
VFState
Vibration
VicinitySampler
ViewmolFormat
VisitedAtoms
WedgeLineElement
WedgeLineElement.Direction
WedgeLineElement.TYPE
WeightDescriptor
WeightedPathDescriptor
WHIMDescriptor
WienerNumbersDescriptor
WriterFactory
XEDFormat
XLogPDescriptor
XMLIsotopeFactory
XYZFormat
XYZReader
XYZWriter
YasaraFormat
ZagrebIndexDescriptor
ZindoFormat
ZMatrixFormat
ZMatrixReader
ZMatrixTools