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staff:kriege [2012-07-10 18:47] Nils Kriege [Teaching (in German)] |
staff:kriege [2013-05-21 19:30] (current) Nils Kriege [Publications] |
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| | Fax: | +49 231 755 7740 | | | Fax: | +49 231 755 7740 | | ||
| | E-Mail: | nils.kriege{{:staff:at.gif|}}tu-dortmund.de| | | E-Mail: | nils.kriege{{:staff:at.gif|}}tu-dortmund.de| | ||
| + | |||
| + | ===== Research Interests ===== | ||
| + | * Combinatorial Optimization, Graph Algorithms | ||
| + | * Data Mining, Machine Learning with Graphs | ||
| + | * Information Visualization, Visual Analytics | ||
| + | * Applications in Cheminformatics | ||
| ===== Teaching (in German) ===== | ===== Teaching (in German) ===== | ||
| - | == Sommersemester 2012 == | + | == Lehrveranstaltung == |
| - | * Seminar [[teaching:seminarae-ss2012|Algorithm Engineering]] mit Schwerpunkt //Graph Data Mining// | + | * **Sommersemester 2013** |
| - | + | * Seminar [[teaching:seminarae-ss2013|Algorithm Engineering]] | |
| - | == Sommersemester 2011 == | + | * **Wintersemester 2012/13** |
| - | * [[teaching:drughunting|PG 552: Drug Hunting]] - Navigation und visuelle Analyse im pharmakologischen Strukturraum | + | * Seminar [[teaching:seminarae-ws2012|Algorithm Engineering]] |
| - | * Fachprojekt [[teaching:fp_ae-2011|Algorithm Engineering]] | + | * **Sommersemester 2012** |
| - | + | * Seminar [[teaching:seminarae-ss2012|Algorithm Engineering]] mit Schwerpunkt //Graph Data Mining// | |
| - | == Wintersemester 2010/11 == | + | * **Sommersemester 2011** |
| - | * [[teaching:drughunting|PG 552: Drug Hunting]] - Navigation und visuelle Analyse im pharmakologischen Strukturraum | + | * [[teaching:drughunting|PG 552: Drug Hunting]] - Navigation und visuelle Analyse im pharmakologischen Strukturraum |
| - | * Seminar [[teaching:seminarae-2010|Algorithm Engineering]] | + | * Fachprojekt [[teaching:fp_ae-2011|Algorithm Engineering]] |
| - | + | * **Wintersemester 2010/11** | |
| - | == Sommersemester 2010 == | + | * [[teaching:drughunting|PG 552: Drug Hunting]] - Navigation und visuelle Analyse im pharmakologischen Strukturraum |
| - | * Seminar [[staff:wong:seminar2010|Graphenalgorithmen]] | + | * Seminar [[teaching:seminarae-2010|Algorithm Engineering]] |
| + | * **Sommersemester 2010** | ||
| + | * Seminar [[staff:wong:seminar2010|Graphenalgorithmen]] | ||
| == Diplom-/Bachelor-/Master-Studenten == | == Diplom-/Bachelor-/Master-Studenten == | ||
| + | * **Fabian Weißberg**: //Verfeinerung bitvektorbasierter Filterverfahren zur Substruktursuche in Molekülgraphdatenbanken//, Bachelorarbeit, 2013 | ||
| * **Henning Garus**: //Interactive Visualization of Molecular Scaffold Networks//, Diplomarbeit, 2012 | * **Henning Garus**: //Interactive Visualization of Molecular Scaffold Networks//, Diplomarbeit, 2012 | ||
| * **Patrick Baron**: //Integration ausgewählter Analyseverfahren für Affiliation-Netzwerke in Cytoscape//, Bachelorarbeit, 2012 | * **Patrick Baron**: //Integration ausgewählter Analyseverfahren für Affiliation-Netzwerke in Cytoscape//, Bachelorarbeit, 2012 | ||
| - | * **Till Schäfer**: //Beschleunigung hierarchischer Clusterverfahren für allgemeine metrische Distanzmaße//, Diplomarbeit, 2012 | + | * **[[staff:schaefer|Till Schäfer]]**: //Beschleunigung hierarchischer Clusterverfahren für allgemeine metrische Distanzmaße//, Diplomarbeit, 2012 |
| * **[[staff:daddario|Marianna D'Addario]]**: //Entwurf von Oligonukleotid-Bibliotheken für die DNA-Nanotechnologie//, Diplomarbeit (Kooperation mit [[staff:rahmann|Prof. Rahmann]] und Prof. Niemeyer, Chemie), 2011 | * **[[staff:daddario|Marianna D'Addario]]**: //Entwurf von Oligonukleotid-Bibliotheken für die DNA-Nanotechnologie//, Diplomarbeit (Kooperation mit [[staff:rahmann|Prof. Rahmann]] und Prof. Niemeyer, Chemie), 2011 | ||
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| ===== Publications ===== | ===== Publications ===== | ||
| + | * **[[http://dx.doi.org/10.1007/978-3-642-38241-3_12|Scaffold Hunter: Facilitating Drug Discovery by Visual Analysis of Chemical Space]]** \\ Karsten Klein, Nils Kriege, Petra Mutzel \\ in: G. Csurka, M. Kraus, R. Laramee, P. Richard, J. Braz (Eds.), Computer Vision, Imaging and Computer Graphics. Theory and Application; Communications in Computer and Information Science, 2013, 359, 176-192 | ||
| + | |||
| + | * **MolMap -- Visualizing Molecule Libraries as Topographic Maps** \\ Martin Gronemann, Michael Jünger, Nils Kriege, Petra Mutzel \\ International Conference on Information Visualization Theory and Applications (IVAPP) 2013, accepted for publication. | ||
| + | |||
| + | * **[[http://dx.doi.org/10.4230/OASIcs.GCB.2012.82|Designing q-Unique DNA Sequences with Integer Linear Programs and Euler Tours in De Bruijn Graphs]]** \\ Marianna D'Addario, Nils Kriege, Sven Rahmann \\ German Conference on Bioinformatics (GCB) 2012, Jena, Germany, 82-92. | ||
| + | |||
| * **Subgraph Matching Kernels for Attributed Graphs** ([[http://arxiv.org/abs/1206.6483|arXiv.org]], [[http://icml.cc/discuss/2012/542.html|icml.cc]]) \\ Nils Kriege, Petra Mutzel \\ International Conference on Machine Learning (ICML) 2012. | * **Subgraph Matching Kernels for Attributed Graphs** ([[http://arxiv.org/abs/1206.6483|arXiv.org]], [[http://icml.cc/discuss/2012/542.html|icml.cc]]) \\ Nils Kriege, Petra Mutzel \\ International Conference on Machine Learning (ICML) 2012. | ||
| - | * **Scaffold Hunter -- Visual Analysis of Chemical Compound Databases** \\ Karsten Klein, Nils Kriege, Petra Mutzel \\ International Conference on Information Visualization Theory and Applications (IVAPP) 2012, **Best Paper Award**, to appear. | + | * **Scaffold Hunter -- Visual Analysis of Chemical Compound Databases** \\ Karsten Klein, Nils Kriege, Petra Mutzel \\ International Conference on Information Visualization Theory and Applications (IVAPP) 2012, 626-635, **Best Paper Award**. |
| - | * **CT-Index: Fingerprint-based Graph Indexing Combining Cycles and Trees** \\ Karsten Klein, Nils Kriege, Petra Mutzel \\ in: Proceedings of the 27th International Conference on Data Engineering, ICDE 2011, Hannover, Germany, 2011, 1115-1126 | + | * **CT-Index: Fingerprint-based Graph Indexing Combining Cycles and Trees** \\ Karsten Klein, Nils Kriege, Petra Mutzel \\ in: Proceedings of the 27th International Conference on Data Engineering (ICDE) 2011, Hannover, Germany, 1115-1126 |
| * **[[http://ls11-www.cs.uni-dortmund.de/_media/techreports/tr10-01.pdf|Erweiterte Substruktursuche in Moleküldatenbanken und ihre Integration in Scaffold Hunter]]** \\ Nils Kriege \\ in: TR10-1-001, Algorithm Engineering Report, Fakultät für Informatik, TU Dortmund, 2010.\\ Diploma Thesis, TU Dortmund, December 2009. | * **[[http://ls11-www.cs.uni-dortmund.de/_media/techreports/tr10-01.pdf|Erweiterte Substruktursuche in Moleküldatenbanken und ihre Integration in Scaffold Hunter]]** \\ Nils Kriege \\ in: TR10-1-001, Algorithm Engineering Report, Fakultät für Informatik, TU Dortmund, 2010.\\ Diploma Thesis, TU Dortmund, December 2009. | ||
| * **Scaffold Hunter - Interactive Exploration of Chemical Space** \\ Karsten Klein, Nils Kriege, Petra Mutzel, Herbert Waldmann, Stefan Wetzel \\ in: D. Eppstein, E. Gansner (Eds.), 17th Symposium on Graph Drawing 2009, Chicago \\ Lecture Notes in Computer Science 5849, 2010, 426-427 | * **Scaffold Hunter - Interactive Exploration of Chemical Space** \\ Karsten Klein, Nils Kriege, Petra Mutzel, Herbert Waldmann, Stefan Wetzel \\ in: D. Eppstein, E. Gansner (Eds.), 17th Symposium on Graph Drawing 2009, Chicago \\ Lecture Notes in Computer Science 5849, 2010, 426-427 | ||