File:           dsc_changelog.txt
Author:         Udo Feldkamp
First Created:  10.08.2007
Last Change:    16.04.2009
Comment:        Change log for dsc.


3.09:
Bufix in DeLaNA output file concerning Mg concentration and DeltaG
calculation.
New config parameter for random order of sequence groups.

3.08:
Entries in ReappearingBaseStrands.* can now be seperated by empty lines.
Minor bugfix in writing DeLaNA output file.

3.07:
Changed default values for DNA sample concentration, Na+ concentration,
n_b, and group size to more sensible values.

3.06:
New config parameter for rich text format output of uniqueness analysis.
In uniqueness analysis output files (ReappearingBaseStrands.*) now
sequence identifiers are printed instead of sequence numbers.

3.05:
Consecutive calls of dsc with random seed 0 should now produce more 
diverse sequence pools.
Added probabilistic successor choice methods that allow dsc to make
mistakes.

3.04:
Read tool specific parameters now from configuration file (-c argument).
Fixed a bug that could lead to violation of n_b-uniqueness.

3.03:
Added group size argument (-g).
Some additional protocol output (for debug output).
Fixed bug that counted too much steps.
ReappearingBaseStrands.txt now contain less redundance.
Definition of many SEQUENCE objects with square bracket notation.

3.02:
Added time measuring mode (-t switch).

3.01:
Avoid sequence symmetry aroung branching points of junctions.